Resources

Resources	Description
Tools for Microbiome analysis	Useful R packages for 16S rRNA gene and shotgun data analysis and visualization
Quantitative Insights Into Microbial Ecology (QIIME)	QIIME is a bioinformatics pipeline enabling analysis of microbiome DNA metadata. It allows users to perform statistical analyses of results and generate high-quality graphs
dada2 R package	dada2 is an R package dedicated to the analysis of microbiome data

Resources	Description
16S workflow	H3ABioNet guideline for Bioinformatic and statistical analysis on 16S rDNA data
The National Academic Press	Current methods for studying human microbiome project- Human and environmental chemicals interactions characterisation.
NIH: Teaching the microbiome	Collection of various Internet-based tools and resources for teaching the microbiome

Resources	Description
African Human Microbiome Portal	A repository for microbiome metadata associated with African human populations.
Human OncoBiome Database	Database of comprehensive curated information on the bacterial species present in the human cancer microbiota.
MicrobiomeDB	MicrobiomeDB is a data mining platform enabling the exploration of microbiome studies. This platform also provides visualization and analysis tools to investigate microbiome data.
Human Microbiome Project Data Portal	The Human Microbiome Project Data Portal enables the exploration of studies and data associated with the human microbiome. Furthermore, this web interface provides access to the tools used to analyze microbiome.
Human Oral Microbiome Database (eHOMD)	comprehensive and curated information on the bacterial species present in the human aerodigestive tract
Disbiome database	Database providing an overview of differential microbial composition in diseases
MDB: Microbiome Database	This database provides sequencing resource and accurate metadata of metagenomics samples, as well as gene catalogs.